My Publications
- Richard Owczarzy, Bernardo G. Moreira, Yong You, Mark A. Behlke, and Joseph A. Walder (2008)
Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations.
Biochemistry 47, 5336-5353.
(Abstract) and
(Full text at publisher web site).
- Andrey V. Tataurov, Yong You, and Richard Owczarzy (2008)
Predicting ultraviolet spectrum of single stranded and double stranded deoxyribonucleic acids.
Biophysical Chemistry 133, 66-70.
(Abstract) and
(Full text at publisher web site).
- Yong You, Bernardo G. Moreira, Mark A. Behlke, and Richard Owczarzy (2006)
Design of LNA probes that improve mismatch discrimination.
Nucleic Acids Research 34, e60.
(Abstract) and
(Full text in PDF file).
- Kathleen E. Mandell, Peter M. Vallone, Richard Owczarzy, Peter V. Riccelli, and
Albert S. Benight (2006)
Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences.
Biopolymers 82, 199-221.
(Abstract) and
(Full text at publisher web site).
- Bernardo G. Moreira, Yong You, Mark A. Behlke, and Richard Owczarzy
(2005) Effects of
fluorescent dyes, quenchers, and dangling ends on DNA duplex stability.
Biochemical and Biophysical Research Communications 327, 473-484.
(Abstract) and
(Full text at publisher web site).
- Richard Owczarzy, Yong You, Bernardo G. Moreira, Jeffrey A. Manthey,
Lingyan Huang, Mark A. Behlke, and Joseph A. Walder (2004) Effects of
sodium ions on DNA duplex oligomers: Improved predictions of melting
temperatures. Biochemistry 43, 3537-3554.
(Abstract) and
(Full text at publisher web site).
- Richard Owczarzy, Isard Dunietz, Mark A. Behlke, Irving M. Klotz,
and Joseph A. Walder (2003) Thermodynamic treatment of oligonucleotide
duplex-simplex equilibria. Proc. Natl. Acad. Sci. USA 100, 14840-14845.
(Abstract) and
(Full text in PDF file).
- Richard Owczarzy (2001) Comments on "Calculation of the Energy of Transition Associated with Inversion in Double-Stranded DNA"
[P.Aggarwal, D. Dollimore, Thermochim. Acta 284 (1996) 109]: a test. Thermochimica Acta 373, 153-160.
(Abstract) and
(Full text in PDF file).
- Benight A.S., Pancoska P., Owczarzy R., Vallone P.M., Nesetril J., and Riccelli P.V. (2001)
Calculating sequence-dependent melting stability of duplex DNA oligomers and multiplex sequence analysis by graphs.
Methods Enzymol. 340 (Drug-nucleic acid interactions), 165-192.
(Citation list).
- Richard Owczarzy, Peter M. Vallone, Robert F. Goldstein, and Albert S. Benight (1999) Studies of DNA dumbbells VII: Evaluation of the
next-nearest-neighbor sequence-dependent interactions in duplex DNA. Biopolymers 52, 29-56.
(Abstract)
and (Full text in PDF file).
- Richard Owczarzy, Peter M. Vallone, Frank J. Gallo, Teodoro M. Paner, Michael J. Lane, and
Albert S. Benight (1997) Predicting sequence-dependent melting stability of short duplex DNA oligomers.
Biopolymers 44, 217-239. (Abstract)
and (Full text in PDF file).
- Teodoro M. Paner, Peter V. Riccelli, Richard Owczarzy, and Albert S. Benight (1996) Studies of DNA
dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex
stem and end-loops of variable size and sequence. Biopolymers 39, 779-793.
(Abstract)
and (Full text in PDF file, 14.6MB!).
My Ph.D. Thesis
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Copyright 2001-2008, Updated February 1, 2008.